yonR [2019-06-07 10:52:33]

similar to transcription regulator ([SW|Xre family])

locus: BSU21020

pI: 5.60

mw: 12.23 kDa

protein length: 108 aa

gene length: 327 bp

function: unknown

product: unknown

essential: no

synonyms

Genomic Context

categories

• [category|SW 3|Information processing] → [category|SW 3.4|Regulation of gene expression] → [category|SW 3.4.2|Transcription factors and their control] → [category|SW 3.4.2.6|Transcription factor/ other/ based on similarity]
• [category|SW 5|Prophages and mobile genetic elements] → [category|SW 5.1|Prophages] → [category|SW 5.1.2|SP-beta prophage]

Gene

Coordinates: 2,221,061 2,221,387

The protein

Protein family

• [SW|Xre family]

Paralogous protein(s)

• [protein|846161AE54F170075F2B2133A8D56FE39A5AF8D9|SknR]

[SW|Localization]

• cell membrane (according to Swiss-Prot)

Expression and Regulation

Operons

• genes: [gene|71012848B12CB7BCDEEACDAC6AD1966A971F8FAB|yonR]-[gene|8FAC496D7A28DA74A7F866AF24C842F733EE20BE|yonS]
  description: [Pubmed|29794222]

  regulation

  • the mRNA is processed between [gene|71012848B12CB7BCDEEACDAC6AD1966A971F8FAB|yonR] and [gene|8FAC496D7A28DA74A7F866AF24C842F733EE20BE|yonS] by [protein|872CCB5A49C9000BD95E4B0472556D5F60F7D7A4|RNase Y], this requires the [protein|EE52DFA35B935E551871D079A9BE877DB2001A3B|YmcA]-[protein|6C9A092F38739A3759793EF8B496569CD02C2E3F|YlbF]-[protein|EBD15C174A03B7FCDFFE4C5DB5D86E93F1B9CAC4|YaaT] complex [Pubmed|29794222]

Biological materials

Mutant

• BKE21020 ([gene|71012848B12CB7BCDEEACDAC6AD1966A971F8FAB|yonR]::erm trpC2) available at [http://www.bgsc.org/getdetail.php?bgscid=BKE21020 BGSC], [Pubmed|28189581], upstream reverse: _UP1_CATAGTAGGTTCCTCACTTT, downstream forward: _UP4_TAGTAGCTATTCTTAATTCT
• BKK21020 ([gene|71012848B12CB7BCDEEACDAC6AD1966A971F8FAB|yonR]::kan trpC2) available at [http://www.bgsc.org/getdetail.php?bgscid=BKK21020 BGSC], [Pubmed|28189581], upstream reverse: _UP1_CATAGTAGGTTCCTCACTTT, downstream forward: _UP4_TAGTAGCTATTCTTAATTCT

References

• 23504016,29794222